ATIDB : The Arabidopsis thaliana Integrated Database
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Program
tblastn : PROTEIN query / nucleotide sequences
blastx : DNA query / protein sequences
blastn : DNA query / nucleotide sequences
tblastx : DNA query / nucleotide sequences (query and subject translated)
blastp : PROTEIN query / protein sequences
Database
Arabidopsis T-DNA and Transposon flanking sequences
Arabidopsis thaliana nuclear, chloroplast and mitochondrial [TAIR version 6]
Arabidopsis thaliana cDNAs [TAIR version 6]
Arabidopsis thaliana Coding Sequences [TAIR version 6]
Arabidopsis thaliana complete gene regions (most include UTRs) [TAIR version 6]
17 b.p. signatures from MPSS of flower and seed RNA - see Lu et al/Science/2005
Gapped blast?
allow gaps
no gaps
P value cutoff
1E-100
1E-50
1E-10
0.001
0.01
0.1
10
100
1000
Limit Output (V): Max. one line descriptions
1
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5
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20
40
80
160
320
Limit Output (B): Max. of HSPs
1
2
5
10
20
40
80
160
320
Filter low complexity regions
Paste your sequence into the text field